Publication Lists　2025†

Article Paper List†

Subcellular analysis of fatty acid metabolism using organelle-selective click chemistry†

Takami Kimura, Seita Kawamoto, Alma Fujisawa, Mao Yoshida, Yuying Shen, Masaki Tsuchiya, Tomonori Tamura*, Itaru Hamachi*
Journal of the American Chemical Society, just accepted

Rapid and reversible fluorescent probe enables repeated snapshot imaging of AMPA receptors during synaptic plasticity†

Kyohei Soga, Takaaki Fujiwara, Mayu Nakagawa, Akihiro Shibata, Hansel Adriel, Kenji Yatsuzuka, Wataru Kakegawa, Michisuke Yuzaki, Itaru Hamachi, Eriko Nango*, Shigeki Kiyonaka*
Science Advances, 11, 23, 2375-2548 (2025)　doi: 10.1126/sciadv.adt6683

In-brain synthesis of receptor-based protease sensors by coupling ligand-directed chemistry and click chemistry†

Seiji Sakamoto, Kazuki Shiraiwa, Mengchu Wang, Mamoru Ishikawa, Hiroshi Nonaka,* Itaru Hamachi*
Nature Synthesis (2025)　doi: 10.1038/s44160-025-00815-6

Intratumour oxidative hotspots provide a niche for cancer cell dissemination†

Yoshifumi Ueda, Shigeki Kiyonaka*, Laura M. Selfors, Keisuke Inoue, Hiroshi Harada, Tomohiro Doura, Kunishige Onuma, Makoto Uchiyama, Ryuhei Kurogi, Yuji Yamada, Jiacheng H. Sun, Reiko Sakaguchi, Yuki Tado, Haruki Omatsu, Harufumi Suzuki, Mike Aoun, Takahiro Nakayama, Taketoshi Kajimoto, Tetsuya Yano, Rikard Holmdahl, Itaru Hamachi, Masahiro Inoue, Yasuo Mori*, Nobuaki Takahashi*
Nature Cell Biology, 27, 530-543 (2025)　doi: 10.1038/s41556-025-01617-w

Profiling proteins involved in peroxynitrite homeostasis using ROS/RNS conditional proteomics†

Hao Zhu*, Hiroaki Uno, Kyoichi Matsuba, Itaru Hamachi*
Journal of the American Chemical Society, 147, 9, 7305-7316 (2025)　doi: 10.1021/jacs.4c14060

A Protein Cleavage Platform Based on Selective Formylation at Cysteine Residues†

Naoki Zenmyo, Yuya Matsumoto, Akihiro Yasuda, Shohei Uchinomiya, Naoya Shindo, Kaori Sasaki-Tabata, Emi Mishiro-Sato, Tomonori Tamura, Itaru Hamachi, Akio Ojida*
Journal of the American Chemical Society, 147, 4, 3080-3091(2025)　doi: 10.1021/jacs.4c10991

Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure†

Kodai Yamaura, Naomichi Takemata*, Masashi Kariya, Ayami Osaka, Sonoko Ishino, Masataka Yamauchi, Tomonori Tamura, Itaru Hamachi, Shoji Takada, Yoshizumi Ishino, Haruyuki Atomi*
Nature Communications, 16: 1312 (2025)　doi: 10.1038/s41467-025-56197-y

Conversion of silent synapses to AMPA receptor-mediated functional synapses in human cortical organoids†

Masatoshi Nishimura, Tomoki Kodera, Shota Adachi, Akinori Y. Sato, Ryosuke F. Takeuchi, Hiroshi Nonaka, Itaru Hamachi, Fumitaka Osakada*
Neuroscience Research, 212, 20-30 (2025)　doi: 10.1016/j.neures.2024.12.008

Photoproximity labeling of endogenous receptors in the live mouse brain in minutes†

Mikiko Takato, Seiji Sakamoto, Hiroshi Nonaka, Fatima Yuri Tanimura Valor, Tomonori Tamura*, Itaru Hamachi*
Nature Chemical Biology, 21, 109-119 (2025)　doi: 10.1038/s41589-024-01692-4

Review Paper List†

Recent advances in proximity labeling for chemical proteomics: paving the way for in vivo applications†

Fátima Yuri Tanimura Valor, Tomonori Tamura, Itaru Hamachi*
Current Opinion in Chemical Biology, just accepted

Thoughts for the future†

Lona M. Alkhalaf, Cheryl Arrowsmith, Emily P. Balskus, Giovanna Bergamini, Rashna Bhandari, Christopher J. Chang, Peng Chen, Xing Chen, Alessio Ciulli, Julia A. Cricco, Benjamin G. Davis, Martina Delbianco, Natalia Dudareva, Erin Dueber, Fleur Ferguson, Priscila Oliveira de Giuseppe, Itaru Hamachi, Ming Chen Hammond, Stavroula K. Hatzios, Won Do Heo, Jon Paul Janet, Siddhesh S. Kamat, Stefan Knapp, Yamuna Krishnan, Kathrin Lang, Luca Laraia, Reuben B. Leveson-Gower, Xiang David Li, David R. Liu, Mo-Fang Liu, Nir London, Nilkamal Mahanta, Cristina Mayor-Ruiz, Tom Muir, Mário Tyago Murakami, Hyun-Woo Rhee, Matt Robers, Alex Satz, Brenda A. Schulman, Ben Shen, Brian Shoichet, Erick Strauss, Tsutomu Suzuki, Pratyush Tiwary, Herbert Waldmann, Thomas R. Ward, Amy Weeks, Eranthie Weerapana & Georg Winter
Nature Chemical Biology, 21, 6-15 (2025)　doi:10.1038/s41589-024-01802-2

Selective Labeling of Phosphatidylcholine to Track Their Translocation Between Organelles in Living Cells†

Tomonori Tamura*, Itaru Hamachi*
Intracellular Lipid Transport, 1, 1-11 (2025)　eBook ISBN 978-1-0716-4318-1

Targeted covalent modification strategies for drugging the undruggable targets†

Tomonori Tamura*, Masaharu Kawano, Itaru Hamachi*
Chemical Reviews, 125, 2, 1191-1253 (2025)　doi: 10.1021/acs.chemrev.4c00745

N-acyl-N-alkyl/aryl sulfonamide chemistry assisted by proximity for modification and covalent inhibition of endogenous proteins in living systems†

Tomonori Tamura*, Itaru Hamachi*
Accounts of Chemical Research, 58, 1, 87-100 (2025)　doi: 10.1021/acs.accounts.4c00628

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